That's not a yeast issue ...any yeast would have to restart in the bottle to add carbonation. If you're seeing over-carbonation, gushering on opening, broken bottles then that's a sign of infection, bottling too soon or using more priming sugar than necessary.
The other issues you describe can be attributed to infection as well, depending on the severity. I've had US-05 attenuate to 87% for some very clean (though slightly dry) beer. Extremely clear beer without gelatin or other clearing additives could take 2-3 weeks in the keg or maybe longer if bottle conditioned.
Since you're bottling, I suspect that a slight secondary infection in the bottle has caused all the problems. When an otherwise good beer that's finished clean and attenuated fully is subjected to a wild yeast infection in the bottle, it will over carbonate and gush and stir up all the yeast sediment even though it had settled clear in the bottle.