Isn't that true of all software?
If you just lengthen the boil, and don't change any other parameters, the OG wouldn't change (since you'd have to either start with a larger volume or end with a smaller volume in order to get that to change), and the maillard reactions wouldn't make it much darker unless the volume was reduced. I hope that makes sense.
Now, if you start with 8 gallons, and boil for 120 minutes down to 5 gallons, then yes, the OG would change and so would the color. If you input that into the software, it should give you the changes you would expect.